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Microbiology

Gram-positive and gram-negative flowcharts, anaerobes, HACEK, TSI, parasites.

Microbiology can appear daunting when you don’t know what to focus on. Fortunately, microbiology questions tested on the ASCP exam focus on diagnosis. In a real laboratory, the organism would arrive in some media. You would ask yourself, “I wonder what this organism is?” You would then culture and gram stain, or perform some other tests to figure out what you’re dealing with.

Each organism produces a unique combination of results based on certain testing criteria. In many laboratories, all tests may be performed quickly on a single strip of reagents (API), which change color based on particular enzymatic properties of the organism. However, it’s not practical to memorize positives and negatives for every type of organism. I find that using flowcharts - as if I am conducting manual laboratory testing - make things easier for me.

These are the flowcharts I produced. Once I had these, there was very little additional work for me to do. I only did questions to solidify my recall of the information on the charts.

Gram-positive cocci identification flowchart: catalase, coagulase, hemolysis and follow-up tests
Tap or click the chart to open it full screen and zoom in.
Gram Pos Bacilli
Haemophilus chart
Gram negative bacilli enterobacteriaceae
Curved gram neg bacilli yes online
Gram negative diplococci

An excellent microbiology professor suggested using tables to see what’s unique about a single organism, as it can help you memorize what is so similar about the others. For example, referring to the table of Gram Negative Diplococci, notice how moraxella catarrhalis is negative for acid production from oxidation of glucose, maltose and lactose. Also notice how only one organism is superoxol or DNase positive. By memorizing these few unique characteristics, you’ve essentially memorized all the others!

Obligate anaerobes
Spirochetes

The (H)ACEK organisms

Unfortunately, you just have to memorize some things. For example, here are a few must-know properties of the (H)ACEK organisms. All four are normal oral flora.

OrganismOxidaseKey facts
Actinobacillus (now Aggregatibacter)−Endocarditis; periodontitis
Cardiobacterium hominis+Endocarditis
Eikenella corrodens+Pits the agar; bleach odor; fight bites (clenched-fist injuries)
Kingella+Pits the agar; joint damage

Interpreting a Triple Sugar Iron (TSI) agar slant

Interpreting a TSI agar slant: yellow means fermented, red means not fermented
This is probably a simple concept if you've learned about it in lab or at school. If you haven't, it can be frustrating trying to understand it on your own. I went through quite a few resources on the internet before I finally found a good explanation - and a light bulb went on in my head. I hope this picture can serve you similarly

Parasites

These are the parasites I had to know for school. Only one showed up on my licensing exam so this is decidedly NOT high-yield, although it may help during coursework. I would definitely urge you to know the similarities/differences between the four major Plasmodium species (number of merozoites per schizont; shape, etc).

Intestinal

Protozoa single cell

Amoebae
  • Entamoeba histolytica
  • E. dispar
  • E. hartmanni
  • E. coli
  • Endolimax nana
  • Blastocystis hominis
Flagellates
  • Dientamoeba fragilis
  • Giardia duodenalis (lamblia)
  • Pentatrichomonas hominis
Ciliates
  • Balantidium coli
Sporozoa
  • Cryptosporidium
  • Cystoisospora (Isospora) belli

Helminths multicellular

Nematodes
  • Trichuris trichiura
  • Enterobius vermicularis
  • Necator americanus
  • Ancylostoma duodenale
  • Strongyloides stercoralis
  • Ascaris lumbricoides
Cestodes
  • Diphyllobothrium latum
  • Hymenolepis nana
  • Taenia saginata
  • Taenia solium
Trematodes
  • Fasciolopsis buski
  • Fasciola hepatica
  • Clonorchis sinensis
  • Paragonimus westermani

Schistosomes

  • S. mansoni
  • S. japonicum
  • S. haematobium

Extraintestinal

Protozoa single cell

Blood & tissue
  • Toxoplasma gondii
  • Leishmania
  • Babesia
  • Trypanosoma
Plasmodium
  • P. falciparum
  • P. malariae
  • P. ovale
  • P. vivax
Free-living amoebae
  • Acanthamoeba
  • Naegleria fowleri
Urogenital
  • Trichomonas vaginalis

Helminths multicellular

Nematodes
  • Trichinella spiralis
  • Dracunculus medinensis

Filariae

  • Wuchereria bancrofti
  • Brugia malayi
  • Loa loa
  • Onchocerca volvulus
Cestodes
  • Echinococcus granulosus
90 reader questions about Microbiology
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